Course Portfolio - C484 Biomolecules and Catabolism

Professor Andrew Feig

Department of Chemistry, Indiana University, 800 E. Kirkwood Ave. Bloomington, IN 47405. afeig@indiana.edu

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Course Goals

COURSE CONTENT AND KNOWLEDGE TRANSFER. C484 is a prerequisite for 3 additional courses in the biochemistry major. Hence, there are certain elements of the course content that students must master if they are to be prepared to continue within the major. Most importantly, understanding the differences between and the properties of the major macromolecules is essential for the laboratory course (C487) and biophysical chemistry (C481). Furthermore, if the students fail to grasp the concepts that underlie enzyme catalysis, they will be relegated to rote memorization throughout the coverage of metabolism in the second semester of biochemistry. My personal belief is that if I succeed in obtaining the higher order goals for student development in the course discussed below, the knowledge transfer process takes care of itself.

CONCEPTUAL LEARNING AND ACTIVE INQUIRY. I find this course challenging to teach for several reasons. Although the class is nominally all Biochemistry majors, many of the students are not particularly interested in the subject matter. Instead, they view the biochemistry major as a vehicle for entry into medical school and they are more interested in a their grade (student perception of optimal performance) than in actual learning (my perception of high performance). Toward that end, they want to be told exactly “what to learn” (read “memorize”) and often strive to avoid conceptual or active learning. Because it is atypical of science courses taught at IU, I find many of these students have a severe aversion toward exploring outside the narrow box of multiple choice and short answer questions. It was one of my major goals for the semester, therefore, to breakdown the perception that learning = memorizing facts. I am particularly interested in teaching the students to think effectively about biochemical problems and work through them without the need for rote memorization of endless tables of biochemical factoids.

A prime example of this problem occurred on the second mid-term exam. Question 4c asked the students to design an experiment that might differentiate facilitated transport from passive diffusion across a biological membrane and describe the predicted result for each model. Almost every student remembered the shape of the curves for the two modes of transport, but because it was associated with a rate, more than half said that the X-axis of their plot was time. In fact, the X-axis in question should have been the analyte concentration. The students had memorized the figure without taking the time to understand it. The exam question accurately identified those students using passive and superficial approaches to learning conceptual material. Following the exam, I used this example in class to illustrate the need for many in the class to become more active participants in their learning.

UNDERSTANDING OF BIOCHEMICAL INFORMATION AND ENHANCED COMPUTER LITERACY. Many students enter my class having never used the Internet for serious scientific work. Instead, they see it as a tool for recreation and finding cheap airline tickets. In this post-genomic era, computers are essential tools for studying biochemistry and I use my course as a vehicle for teaching them about the databases and resources that I use on a daily basis to do my research. Students learn not only where to find information, but also how to use the tools that parse and filter the flood of data and how to evaluate the significance of output that is returned from any database search. In the process, they also have to integrate concepts from various facets of the course to understand the bioinformatics projects. Each student performs these assignments on an individual “pet protein” assigned the first day of class. These projects promote open-ended inquiry and help the student place the course material into a broader context.

MOLECULAR VISUALIZATION. Biological molecules tend to be exceedingly complex. It is extremely important for students of biochemistry to learn how to look at these structures and understand them. Computer visualization tools are now readily available to assist us in the process both in the classroom and on any personal computer. I strive to give the students the wherewithal to use these resources to gain insight into the biomolecules we study. The culmination of the visualization exercises is a 200-word prose description of their unknown protein accompanied by one or more figures to illustrate it. Students were then given the opportunity to rewrite their paragraphs and respond to my comments after looking more closely at their proteins.


Copyright, 2002 Andrew Feig.
For problems or questions regarding this web contact [afeig@indiana.edu].
Last updated: March 15, 2002.